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Taxonomy and Carolus Linnaeus Example of Classification Naming Organisms Lesson Summary

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Living Organisms: Organization, Functions Structure
What Are Living Organisms Made Of? - Molecules Functions
The Defining Characteristics of Living Organisms
Unicellular Organisms: Definition Examples
Characteristics of Living Things
Taxonomy: Classification and Naming of Living Things
The Difference Between Plant and Animal Cells
Multicellular Organism: Examples Definition
What Is Genetic Variation? - Sources, Definition Types
What is Bacteria? - Definition Types
What Are Tissues? - Types Explanation
Roots Stems: Structure Function
What Is an Organ System? - Definition Pictures
What is an Energy Pyramid? - Definition Examples
What Is an Ecosystem? - Definition Explanation
Phylum: Characteristics Classification
What is An Atom? - Definition Examples
What is a Food Chain? - Examples, Overview
What is a Food Web? - Definition Explanation
What is Human Body Tissue? - Definition, Types Examples
Earth Science 101: Earth Science
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Introduction to Environmental Science: Help and Review
Guns, Germs, and Steel Study Guide
Ohio Assessments for Educators - Middle Grades Science (029): Practice Study Guide
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Human Anatomy Physiology: Help and Review
High School Biology: Help and Review
College Biology: Help and Review
DSST Health Human Development: Study Guide Test Prep
Middle School Life Science: Help and Review
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Biology: High School
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AP Chemistry: Help and Review
Lesson Transcript
An organism is any living thing. There are millions of organisms, so how do scientists organize them all? Learn more about the diversity of life on Earth and how scientists classify them, then take a quiz to test your knowledge!

Take a look around you. There may be a computer, a plant, some writing utensils, or another person sitting right next to you. Which of the things around you would you characterize as living? If you said the plant and the person, brownie points to you! While it may sound simplistic, it is important to distinguish the difference between living and non-living things for purposes of science.

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A creature's general moral and personal attitudes are represented by its alignment: lawful good, neutral good, chaotic good, lawful neutral, neutral, chaotic neutral, lawful evil, neutral evil, or chaotic evil.

Alignment is a tool for developing your character's identity—it is not a straitjacket for restricting your character. Each alignment represents a broad range of personality types or personal philosophies, so two characters of the same alignment can still be quite different from each other. In addition, few people are completely consistent.

All creatures have an alignment. Alignment determines the effectiveness of some spells and magic items.

Animals and other creatures incapable of moral action are neutral. Even deadly vipers and tigers that eat people are neutral because they lack the capacity for morally right or wrong behavior. Dogs may be obedient and cats free-spirited, but they do not have the moral capacity to be truly lawful or chaotic.

Good Versus Evil

Good characters and creatures protect innocent life. Evil characters and creatures debase or destroy innocent life, whether for fun or profit.

Good implies altruism, respect for life, and a concern for the dignity of sentient beings. Good characters make personal sacrifices to help others.

Evil implies hurting, oppressing, and killing others. Some evil creatures simply have no compassion for others and kill without qualms if doing so is convenient. Others actively pursue evil, killing for sport or out of duty to some evil deity or master.

People who are neutral with respect to good and evil have compunctions against killing the innocent, but may lack the commitment to make sacrifices to protect or help others.

Lawful characters tell the truth, keep their word, respect authority, honor tradition, and judge those who fall short of their duties. Chaotic characters follow their consciences, resent being told what to do, favor new ideas over tradition, and do what they promise if they feel like it.

Law implies honor, trustworthiness, obedience to authority, and reliability. On the downside, lawfulness can include closed-mindedness, reactionary adherence to tradition, self-righteousness, and a lack of adaptability. Those who consciously promote lawfulness say that only lawful behavior creates a society in which people can depend on each other and make the right decisions in full confidence that others will act as they should.

Chaos implies freedom, adaptability, and flexibility. On the downside, chaos can include recklessness, resentment toward legitimate authority, arbitrary actions, and irresponsibility. Those who promote chaotic behavior say that only unfettered personal freedom allows people to express themselves fully and lets society benefit from the potential that its individuals have within them.

Someone who is neutral with respect to law and chaos has some respect for authority and feels neither a compulsion to obey nor a compulsion to rebel. She is generally honest, but can be tempted into lying or deceiving others.

When you are finished with your instance you can clean it up with the instance.stop command like so:

If you have multiple instances running and you want to stop all of them, you can do so with a wildcard or the -a flag:

Note that you must escape the wildcard with a backslash like this \* to pass it properly.

Let’s take a look at setting up a sample nginx web server using instances in Singularity. First we will just create a basic definition file:

All this does is download the official nginx Docker container, convert it to a Singularity image, and tell it to run nginx when you start the instance. Since we’re running a web server, we’re going to run the following commands as root.

Just like that we’ve downloaded, built, and ran an nginx Singularity image. And to confirm that it’s correctly running:

In this section, we will demonstrate an example of packaging a service into a container and running it. The service we will be packaging is an API server that converts a web page into a PDF, and can be found . The final example can be found here on GitHub , and here on SingularityHub . If you wish to just download the final image directly from Singularity Hub, simply run singularity pull shub://bauerm97/instance-example .

To begin, we need to build the image. When looking at the GitHub page of the url-to-pdf-api , we can see that it is a Node 8 server that uses headless Chromium called Puppeteer . Let’s first choose a base from which to build our container, in this case I used the docker image node:8 which comes pre-installed with Node 8:

Puppeteer also requires a few dependencies to be manually installed in addition to Node 8, so we can add those into the post section as well as the installation script for the url-to-pdf-api :

And now we need to define what happens when we start an instance of the container. In this situation, we want to run the commands that starts up the url-to-pdf-api server:

Also, the url-to-pdf-api server requires some environment variables be set, which we can do in the environment section:

Now we can build the definition file into an image! Simply run build and the image will be ready to go:

Now that we have an image, we are ready to start an instance and run the server:

We can confirm it’s working by sending the server an http request using curl:

If you shell into the instance, you can see the running processes:

Now that we have confirmation that the server is working, let’s make it a little cleaner. It’s difficult to remember the exact curl command and URL syntax each time you want to request a PDF, so let’s automate that. To do that, we’re going to be using Standard Container Integration Format (SCIF) apps, which are integrated directly into singularity. If you haven’t already, check out the Singularity app documentation to come up to speed.

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